Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4967

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13334 and 13335 are separated by 874 nucleotides mRNA_4966: 13334 - Hypothetical Protein, at 1,425,631 to 1,426,865 13334 mRNA_4967: 13335 - K11593 ELF2C, AGO eukaryotic translation initiation factor 2C, at 1,427,740 to 1,431,350 13335

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,426,780 - +0.1
1,426,833 - +0.9
1,426,970 + +0.8
1,427,110 + -0.9
1,427,110 + -0.2
1,427,118 + -2.6
1,427,247 - +0.1
1,427,251 + +0.3
1,427,252 - -1.8
1,427,293 + -0.7
1,427,294 + -0.5
1,427,399 + +1.7
1,427,414 + +0.0
1,427,627 - -1.2
1,427,668 + -1.6
1,427,679 + -0.1
1,427,695 - +0.4
1,427,703 + -0.6
1,427,706 - +0.6
1,427,839 - -1.0
1,427,840 - +2.7
1,427,848 - +1.2
1,427,861 + -0.4
1,427,867 - -0.2
1,427,959 - +0.7
1,428,121 + 13335 mRNA_4967 0.11 -1.6
1,428,123 - 13335 mRNA_4967 0.11 +0.3
1,428,144 + 13335 mRNA_4967 0.11 +0.3
1,428,729 + 13335 mRNA_4967 0.27 +0.8
1,428,874 - 13335 mRNA_4967 0.31 -0.2
1,428,874 + 13335 mRNA_4967 0.31 +0.6
1,428,882 - 13335 mRNA_4967 0.32 +0.4
1,428,914 - 13335 mRNA_4967 0.33 +1.5
1,429,033 + 13335 mRNA_4967 0.36 +0.3
1,429,453 - 13335 mRNA_4967 0.47 -0.8
1,429,458 - 13335 mRNA_4967 0.48 -0.2
1,429,472 + 13335 mRNA_4967 0.48 +1.3
1,429,891 - 13335 mRNA_4967 0.60 +2.5
1,429,915 + 13335 mRNA_4967 0.60 -1.5
1,430,037 - 13335 mRNA_4967 0.64 -0.0
1,430,053 - 13335 mRNA_4967 0.64 +0.0
1,430,066 - 13335 mRNA_4967 0.64 -0.1
1,430,332 + 13335 mRNA_4967 0.72 -0.4
1,430,359 + 13335 mRNA_4967 0.73 +1.2
1,430,471 - 13335 mRNA_4967 0.76 -0.2
1,430,562 + 13335 mRNA_4967 0.78 +1.1
1,430,575 - 13335 mRNA_4967 0.79 +1.1
1,430,752 + 13335 mRNA_4967 0.83 -2.2
1,430,781 - 13335 mRNA_4967 0.84 +1.1
1,431,238 + -0.4
1,431,547 - +2.2
1,431,996 + +1.7
1,432,106 + +2.0
1,432,242 - -0.6
1,432,243 + +0.2
1,432,268 + -0.6

Or see this region's nucleotide sequence