Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4971

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13339 and 13340 are separated by 914 nucleotides mRNA_4971: 13339 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 1,447,089 to 1,449,047 13339 mRNA_4972: 13340 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 1,449,962 to 1,451,515 13340

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,446,764 - +1.3
1,447,023 + +0.4
1,447,850 + 13339 mRNA_4971 0.39 +0.3
1,447,877 - 13339 mRNA_4971 0.40 -0.5
1,448,793 - 13339 mRNA_4971 0.87 -0.3
1,448,824 - 13339 mRNA_4971 0.89 +2.7
1,449,715 - +0.6
1,449,827 + +0.5
1,449,880 + -0.4

Or see this region's nucleotide sequence