Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5034

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13401 and 13402 are separated by 957 nucleotides13402 and 13403 are separated by 522 nucleotides mRNA_5033: 13401 - KOG4436 Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains), at 1,601,468 to 1,605,781 13401 mRNA_5034: 13402 - KOG4589 Cell division protein FtsJ, at 1,606,739 to 1,607,440 13402 mRNA_5035: 13403 - K11304 TIP60, KAT5, ESA1 histone acetyltransferase HTATIP, at 1,607,963 to 1,609,879 13403

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,606,034 + -1.5
1,606,048 - -0.7
1,606,502 - +0.8
1,606,622 + +0.6
1,606,964 - 13402 mRNA_5034 0.32 +2.2
1,607,224 - 13402 mRNA_5034 0.69 +0.6
1,607,231 + 13402 mRNA_5034 0.70 +1.5
1,607,472 - -0.6
1,607,523 + +0.1
1,607,623 + +0.6
1,607,634 - -0.3
1,607,780 - +0.8
1,607,790 + +0.6
1,607,794 + +0.5
1,607,801 + -0.2

Or see this region's nucleotide sequence