Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5052

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13419 and 13420 are separated by 184 nucleotides13420 and 13421 are separated by 349 nucleotides mRNA_5051: 13419 - KOG1382 Multiple inositol polyphosphate phosphatase, at 1,635,968 to 1,637,866 13419 mRNA_5052: 13420 - Hypothetical Protein, at 1,638,051 to 1,638,624 13420 mRNA_5053: 13421 - Hypothetical Protein, at 1,638,974 to 1,640,272 13421

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,637,081 - 13419 mRNA_5051 0.59 -0.9
1,637,376 - 13419 mRNA_5051 0.74 -0.2
1,637,377 + 13419 mRNA_5051 0.74 -0.1
1,637,391 + 13419 mRNA_5051 0.75 +0.1
1,637,393 - 13419 mRNA_5051 0.75 +3.1
1,637,646 + 13419 mRNA_5051 0.88 +0.5
1,637,746 - +0.7
1,637,809 - -2.5
1,637,972 - -0.4
1,638,124 + 13420 mRNA_5052 0.13 +0.2
1,638,267 - 13420 mRNA_5052 0.38 +0.1
1,638,287 + 13420 mRNA_5052 0.41 +1.3
1,638,848 + +0.3
1,638,970 - -0.5
1,639,045 - -0.6
1,639,249 - 13421 mRNA_5053 0.21 +1.6
1,639,249 - 13421 mRNA_5053 0.21 +0.9
1,639,592 - 13421 mRNA_5053 0.48 +0.5

Or see this region's nucleotide sequence