Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5109

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13476 and 13477 are separated by 383 nucleotides13477 and 13478 are separated by 262 nucleotides mRNA_5108: 13476 - BLAST V175_0103_1006-like protein [Amanita sp. 'sp-jack1'], at 1,779,860 to 1,781,501 13476 mRNA_5109: 13477 - K17605 PPP2R4, PTPA serine/threonine-protein phosphatase 2A activator, at 1,781,885 to 1,783,353 13477 mRNA_5110: 13478 - HMMPfam-Phosphotyrosyl phosphate activator (PTPA) protein-PF03095,SUPERFAMILY--SSF140984, at 1,783,616 to 1,785,108 13478

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,780,938 - 13476 mRNA_5108 0.66 +1.8
1,781,046 + 13476 mRNA_5108 0.72 +0.0
1,781,500 + -1.4
1,781,689 + -1.6
1,781,792 + -1.1
1,781,807 - -0.2
1,781,811 + +1.0
1,783,598 + -0.6
1,783,743 - +0.9
1,783,866 - 13478 mRNA_5110 0.17 -1.0
1,784,057 + 13478 mRNA_5110 0.30 +2.3
1,784,158 - 13478 mRNA_5110 0.36 +2.6
1,784,166 + 13478 mRNA_5110 0.37 -1.0

Or see this region's nucleotide sequence