Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5125

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13492 and 13493 are separated by 177 nucleotides13493 and 13494 are separated by 123 nucleotides13494 and 13495 are separated by 287 nucleotides mRNA_5124: 13492 - K13248 PHOSPHO2 pyridoxal phosphate phosphatase PHOSPHO2, at 1,816,992 to 1,818,246 13492 mRNA_5125: 13493 - Interpro Protein of unknown function (DUF3431), at 1,818,424 to 1,820,541 13493 mRNA_5126: 13494 - Hypothetical Protein, at 1,820,665 to 1,821,231 13494 mRNA_5127: 13495 - K07941 ARF6 ADP-ribosylation factor 6, at 1,821,519 to 1,822,822 13495

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,818,297 + +1.6
1,818,305 + +2.3
1,818,381 - +0.1
1,818,785 + 13493 mRNA_5125 0.17 +0.5
1,819,881 + 13493 mRNA_5125 0.69 +1.6
1,819,900 + 13493 mRNA_5125 0.70 +0.0
1,819,995 - 13493 mRNA_5125 0.74 -0.3
1,820,213 + 13493 mRNA_5125 0.84 -1.8
1,820,854 - 13494 mRNA_5126 0.33 +1.6
1,820,855 - 13494 mRNA_5126 0.34 +0.9
1,820,857 - 13494 mRNA_5126 0.34 +1.0
1,820,867 - 13494 mRNA_5126 0.36 +1.1
1,820,962 - 13494 mRNA_5126 0.52 -0.2
1,821,010 + 13494 mRNA_5126 0.61 -0.4
1,821,052 + 13494 mRNA_5126 0.68 +0.5
1,821,441 + +0.8

Or see this region's nucleotide sequence