Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5141

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13509 and 13510 are separated by 952 nucleotides mRNA_5141: 13509 - K12198 CHMP5, VPS60 charged multivesicular body protein 5, at 1 to 752 13509 mRNA_5142: 13510 - K13577 SLC25A10, DIC solute carrier family 25 (mitochondrial dicarboxylate transporter), member 10, at 1,705 to 3,095 13510

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1 + +0.1
284 - 13509 mRNA_5141 0.38 +2.2
385 - 13509 mRNA_5141 0.51 +0.3
405 - 13509 mRNA_5141 0.54 +0.4
415 + 13509 mRNA_5141 0.55 +1.1
686 + -0.3
1,004 + -0.5
1,164 + -0.4
1,286 - -0.1
1,299 + -1.7
1,302 - -0.1
1,556 - +0.5

Or see this region's nucleotide sequence