Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5186

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13554 and 13555 are separated by 690 nucleotides mRNA_5186: 13554 - KOG0023 Alcohol dehydrogenase, class V, at 101,538 to 103,195 13554 mRNA_5187: 13555 - KOG2533 Permease of the major facilitator superfamily, at 103,886 to 106,875 13555

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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100,635 + -0.9
100,646 - -0.5
100,687 + -0.8
100,731 - +0.9
100,845 - +0.6
100,851 - -0.4
100,855 - +1.0
101,137 - -0.6
101,887 - 13554 mRNA_5186 0.21 -0.1
102,042 - 13554 mRNA_5186 0.30 +1.9
102,207 - 13554 mRNA_5186 0.40 -0.1
102,470 - 13554 mRNA_5186 0.56 -0.0
102,564 - 13554 mRNA_5186 0.62 +0.9
103,250 - +0.4
103,414 + +0.2
103,587 - -0.9
103,612 + -0.9
103,729 + -1.0
103,740 + +2.1
103,896 - +1.5

Or see this region's nucleotide sequence