Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5211

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13578 and 13579 are separated by 385 nucleotides13579 and 13580 are separated by 603 nucleotides mRNA_5210: 13578 - KOG3221 Glycolipid transfer protein, at 156,736 to 157,976 13578 mRNA_5211: 13579 - BLAST related to UPF0768 protein YBL029C-A [Zygosaccharomyc..., at 158,362 to 159,031 13579 mRNA_5212: 13580 - K00624 E2.3.1.7 carnitine O-acetyltransferase, at 159,635 to 162,568 13580

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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158,164 + -0.6
158,168 + +0.6
158,282 + -0.2
158,300 + +0.9
158,329 + -0.2
158,446 + 13579 mRNA_5211 0.13 +0.4
158,622 - 13579 mRNA_5211 0.39 +1.7
158,736 - 13579 mRNA_5211 0.56 -0.1
158,760 + 13579 mRNA_5211 0.59 +0.4
159,192 - -1.5
159,462 + -3.1

Or see this region's nucleotide sequence