Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5215

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13582 and 13583 are separated by 146 nucleotides13583 and 13585 are separated by 315 nucleotides mRNA_5214: 13582 - K03845 ALG3 alpha-1,3-mannosyltransferase, at 164,395 to 166,467 13582 mRNA_5215: 13583 - KOG1940 Zn-finger protein, at 166,614 to 167,435 13583 mRNA_5217: 13585 - Hypothetical Protein, at 167,751 to 168,514 13585

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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165,701 - 13582 mRNA_5214 0.63 +0.8
165,858 + 13582 mRNA_5214 0.71 -0.6
165,948 + 13582 mRNA_5214 0.75 -0.3
166,072 + 13582 mRNA_5214 0.81 +2.0
166,118 - 13582 mRNA_5214 0.83 -0.2
166,235 + 13582 mRNA_5214 0.89 +0.9
166,253 - 13582 mRNA_5214 0.90 +1.1
166,276 - -0.6
166,355 + +0.4
166,394 + +0.3
166,407 + -0.6
166,408 + +2.3
166,755 + 13583 mRNA_5215 0.17 +0.3
167,243 + 13583 mRNA_5215 0.77 +0.6
167,536 - -0.3
167,984 + 13585 mRNA_5217 0.30 +1.2
168,036 + 13585 mRNA_5217 0.37 +0.3
168,141 - 13585 mRNA_5217 0.51 +1.7
168,170 - 13585 mRNA_5217 0.55 +2.1
168,417 - 13585 mRNA_5217 0.87 -0.8
168,429 - 13585 mRNA_5217 0.89 +1.5

Or see this region's nucleotide sequence