Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5221

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13589 and 13590 are separated by 265 nucleotides mRNA_5221: 13589 - HMMPfam-Cellulase (glycosyl hydrolase family 5)-PF00150,SUPERFAMILY--SSF51445, at 184,059 to 187,472 13589 mRNA_5222: 13590 - Hypothetical Protein, at 187,738 to 188,641 13590

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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183,061 + +1.1
183,064 - +0.2
183,069 + +0.1
183,070 + +2.0
183,080 + -0.2
183,093 + +1.5
183,142 + -0.7
183,163 + -0.9
183,198 - +1.1
183,218 + +0.1
183,280 - +1.1
183,316 + -1.5
183,336 - +1.8
183,345 - -1.3
183,454 - -1.1
183,477 - +0.4
183,543 + -1.2
183,786 + -1.6
183,909 + -0.3
183,914 - +1.2
183,916 - -0.1
183,924 - +0.5
183,925 + +0.2
183,939 + -0.4
183,943 + -1.1
184,069 - +0.3
184,086 + +0.6
184,313 + -2.3
184,473 - 13589 mRNA_5221 0.12 -0.4
184,482 + 13589 mRNA_5221 0.12 -1.6
184,519 - 13589 mRNA_5221 0.13 +1.2
184,522 - 13589 mRNA_5221 0.14 -0.4
184,524 - 13589 mRNA_5221 0.14 +2.4
184,528 + 13589 mRNA_5221 0.14 +0.8
184,933 + 13589 mRNA_5221 0.26 +1.4
185,082 + 13589 mRNA_5221 0.30 -2.0
185,362 + 13589 mRNA_5221 0.38 +0.2
185,385 - 13589 mRNA_5221 0.39 +0.7
185,656 + 13589 mRNA_5221 0.47 -0.8
185,688 - 13589 mRNA_5221 0.48 -1.1
185,692 + 13589 mRNA_5221 0.48 +0.8
185,716 + 13589 mRNA_5221 0.49 +2.1
185,807 + 13589 mRNA_5221 0.51 +0.9
185,832 - 13589 mRNA_5221 0.52 -1.4
185,853 - 13589 mRNA_5221 0.53 -0.1
185,934 + 13589 mRNA_5221 0.55 -1.6
186,000 - 13589 mRNA_5221 0.57 +0.3
186,102 - 13589 mRNA_5221 0.60 +2.0
186,270 - 13589 mRNA_5221 0.65 +0.2
186,400 + 13589 mRNA_5221 0.69 -0.1
186,403 - 13589 mRNA_5221 0.69 +0.5
186,523 + 13589 mRNA_5221 0.72 +0.3
186,525 - 13589 mRNA_5221 0.72 +2.0
186,586 - 13589 mRNA_5221 0.74 -0.4
186,717 - 13589 mRNA_5221 0.78 +1.4
187,013 + 13589 mRNA_5221 0.87 +1.5
187,395 - +3.0
187,538 + -0.0
187,561 + -0.4
187,569 + +2.5
187,712 + -0.1
187,739 + -1.8
187,822 + -1.5
188,021 - 13590 mRNA_5222 0.31 +0.2
188,189 + 13590 mRNA_5222 0.50 +2.1
188,435 + 13590 mRNA_5222 0.77 +3.4

Or see this region's nucleotide sequence