Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5282

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13649 and 13650 are separated by 289 nucleotides13650 and 13651 are separated by 152 nucleotides mRNA_5281: 13649 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 350,665 to 352,490 13649 mRNA_5282: 13650 - Hypothetical Protein, at 352,780 to 353,603 13650 mRNA_5283: 13651 - Hypothetical Protein, at 353,756 to 354,946 13651

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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351,857 + 13649 mRNA_5281 0.65 +0.1
351,937 + 13649 mRNA_5281 0.70 +0.9
352,592 + -2.0
353,521 + +0.3
353,524 + +1.9
353,835 + -0.0
353,857 - +0.9
354,027 + 13651 mRNA_5283 0.23 +1.5
354,122 - 13651 mRNA_5283 0.31 +0.1
354,447 + 13651 mRNA_5283 0.58 +1.0

Or see this region's nucleotide sequence