Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5286

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13653 and 13654 are separated by 286 nucleotides13654 and 13655 are separated by 479 nucleotides mRNA_5285: 13653 - HMMPfam-FAD binding domain-PF01494,PRINTS-Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature-PR00420,SUPERFAMILY--SSF51905, at 358,182 to 359,480 13653 mRNA_5286: 13654 - Hypothetical Protein, at 359,767 to 360,966 13654 mRNA_5287: 13655 - KOG0835 Cyclin L, at 361,446 to 362,639 13655

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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359,136 - 13653 mRNA_5285 0.73 -0.2
359,152 - 13653 mRNA_5285 0.75 +1.0
359,269 + 13653 mRNA_5285 0.84 +1.8
359,271 - 13653 mRNA_5285 0.84 +0.3
359,440 - +1.7
359,452 + +0.1
359,583 - +2.3
359,724 - +0.2
359,780 - +0.7
359,844 + +0.0
359,995 + 13654 mRNA_5286 0.19 -0.5
360,125 - 13654 mRNA_5286 0.30 +0.2
360,369 + 13654 mRNA_5286 0.50 -0.6
360,639 + 13654 mRNA_5286 0.73 -0.1
360,752 + 13654 mRNA_5286 0.82 +0.4
360,862 - -0.2
360,869 - -0.5
360,872 - +0.2
360,875 + -0.7
360,875 + +1.0
360,880 + +1.1
361,029 - +0.2
361,038 + -0.0
361,221 - +0.8
361,301 + +1.2
361,340 - +1.8
361,345 + -1.7
361,354 + -2.1

Or see this region's nucleotide sequence