Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5290

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13657 and 13658 are separated by 421 nucleotides13658 and 13659 are separated by 397 nucleotides mRNA_5289: 13657 - K00344 qor, CRYZ NADPH2-quinone reductase, at 363,937 to 365,504 13657 mRNA_5290: 13658 - HMMPfam-ARID/BRIGHT DNA binding domain-PF01388,ProSiteProfiles-ARID domain profile.-PS51011,SMART-BRIGHT, ARID (A/T-rich interaction domain) domain-SM00501,SMART-ARID/BRIGHT DNA binding domain-SM01014,SUPERFAMILY--SSF46774, at 365,926 to 369,880 13658 mRNA_5291: 13659 - K00799 GST, gst glutathione S-transferase, at 370,278 to 371,436 13659

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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364,965 - 13657 mRNA_5289 0.66 -0.1
365,130 + 13657 mRNA_5289 0.76 +0.8
365,141 - 13657 mRNA_5289 0.77 +0.0
365,286 - 13657 mRNA_5289 0.86 -0.3
365,368 - +0.6
365,385 + +0.6
365,404 - -0.1
365,474 - +0.6
365,710 - +0.6
365,714 + -0.3
365,733 + +0.8
365,865 + +0.2
365,890 - +0.4
365,936 - -0.4
365,976 + +0.7
366,004 + -1.1
366,146 - -1.3
366,151 + -0.9
366,159 - -0.3
366,168 + +0.7
366,172 + +2.9
366,351 + 13658 mRNA_5290 0.11 +0.1
366,989 + 13658 mRNA_5290 0.27 -0.1
367,083 + 13658 mRNA_5290 0.29 +1.7
367,154 - 13658 mRNA_5290 0.31 -0.1
367,251 + 13658 mRNA_5290 0.34 +0.1
367,326 + 13658 mRNA_5290 0.35 +2.8
367,681 - 13658 mRNA_5290 0.44 +0.2
367,719 + 13658 mRNA_5290 0.45 +1.9
367,728 + 13658 mRNA_5290 0.46 +0.1
367,818 + 13658 mRNA_5290 0.48 -0.5
368,441 + 13658 mRNA_5290 0.64 -0.3
368,600 + 13658 mRNA_5290 0.68 -0.1
368,997 + 13658 mRNA_5290 0.78 +3.2
369,132 - 13658 mRNA_5290 0.81 +0.8
369,165 + 13658 mRNA_5290 0.82 -1.2
369,547 - -0.2
369,581 - +3.1
369,591 + -1.2
369,694 - -0.4
369,730 + +0.9
369,743 - +1.5
369,743 + +2.0
369,873 + -0.1
369,885 - -0.1
369,900 + -1.5
369,902 - +1.8
370,012 - +0.9
370,020 - -0.3
370,020 - +0.1
370,021 - +0.6
370,033 + +3.1
370,036 + +0.5
370,039 - -0.9
370,039 - -0.1
370,043 + +0.8
370,070 - +0.5
370,091 - +0.3
370,095 + +0.1
370,097 + -0.2
370,202 + -0.3
370,489 - 13659 mRNA_5291 0.18 +0.3
370,521 + 13659 mRNA_5291 0.21 -0.5
370,738 - 13659 mRNA_5291 0.40 +0.3
370,786 - 13659 mRNA_5291 0.44 +0.2

Or see this region's nucleotide sequence