Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5329

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13696 and 13697 are separated by 148 nucleotides mRNA_5328: 13696 - HMMPfam-ATP adenylyltransferase-PF09830,SUPERFAMILY--SSF54197, at 465,608 to 466,886 13696 mRNA_5329: 13697 - K02212 MCM4, CDC54 DNA replication licensing factor MCM4, at 467,035 to 469,864 13697

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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466,467 - 13696 mRNA_5328 0.67 +0.2
466,598 - 13696 mRNA_5328 0.77 +0.6
466,643 + 13696 mRNA_5328 0.81 +0.4
467,033 - +0.4
467,042 - +1.4
467,138 - +1.1
467,207 - +0.0
467,208 + +0.1
467,251 + +1.3
467,284 - +0.2
467,285 + +2.3
467,318 - 13697 mRNA_5329 0.10 -1.6
468,520 - 13697 mRNA_5329 0.52 -0.1
469,394 - 13697 mRNA_5329 0.83 -0.5

Or see this region's nucleotide sequence