Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5335

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13702 and 13703 are separated by 299 nucleotides13703 and 13704 are separated by 279 nucleotides mRNA_5334: 13702 - K14563 NOP1, FBL rRNA 2'-O-methyltransferase fibrillarin, at 479,497 to 481,330 13702 mRNA_5335: 13703 - HMMPfam-Domain of unknown function (DUF4202)-PF13875, at 481,630 to 482,657 13703 mRNA_5336: 13704 - K14777 DDX47, RRP3 ATP-dependent RNA helicase DDX47/RRP3, at 482,937 to 484,688 13704

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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481,414 + -0.5
481,462 + +1.4
481,532 - +0.2
481,540 + +1.6
481,564 + -0.6
481,703 + -1.1
481,703 + +0.3
481,742 - 13703 mRNA_5335 0.11 -0.4
481,955 + 13703 mRNA_5335 0.32 -0.0
482,031 - 13703 mRNA_5335 0.39 -2.8
482,554 + 13703 mRNA_5335 0.90 +1.8
482,558 - +0.2
482,590 - +3.1
482,818 - -0.5
482,833 - +0.2
482,867 - +1.8

Or see this region's nucleotide sequence