Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5372

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13739 and 13740 are separated by 416 nucleotides mRNA_5371: 13739 - K03859 PIGC, GPI2 phosphatidylinositol glycan, class C, at 565,702 to 566,965 13739 mRNA_5372: 13740 - K04487 iscS, NFS1 cysteine desulfurase, at 567,382 to 569,979 13740

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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566,913 - -2.0
567,014 + -0.1
567,332 - -0.4
569,047 + 13740 mRNA_5372 0.64 -1.0
570,064 + +1.0
570,120 - +0.6
570,270 + -0.0
570,271 + +2.2
570,271 - -0.8
570,397 - -1.9
570,555 - +0.3
570,569 + -0.8
570,582 - -2.4
570,692 - -0.0
570,709 - -0.3
570,849 - -1.7

Or see this region's nucleotide sequence