Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5394

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13762 and 13763 are separated by 73 nucleotides mRNA_5394: 13762 - SUPERFAMILY--SSF54897, at 121 to 1,074 13762 mRNA_5395: 13763 - KOG4551 GPI-GlcNAc transferase complex, PIG-H component, involved in glycosylphosphatidylinositol anchor biosynthesis, at 1,148 to 1,997 13763

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1 + +2.5
1 + +0.3
1 + -0.6
1 + +0.5
23 + -0.6
29 + +1.3
29 + +0.0
34 + -0.3
39 + +1.8
39 + +2.9
47 + +4.6
50 + -0.6
50 + +4.4
50 + -1.2
50 + +1.1
50 - -1.0
51 + -0.0
61 + -0.6
62 + -0.4
96 + +1.3
116 + +2.5
158 - +0.9
159 - -0.0
160 - +2.5
169 - -0.3
180 - +4.1
189 + -0.3
198 + -1.0
201 - -0.6
208 - -0.2
210 + +0.7
225 + 13762 mRNA_5394 0.11 -0.3
225 + 13762 mRNA_5394 0.11 +0.7
244 + 13762 mRNA_5394 0.13 -1.0
245 - 13762 mRNA_5394 0.13 +0.3
271 - 13762 mRNA_5394 0.16 +1.3
276 - 13762 mRNA_5394 0.16 +2.5
277 + 13762 mRNA_5394 0.16 -0.1
280 - 13762 mRNA_5394 0.17 +1.5
306 + 13762 mRNA_5394 0.19 +3.1
317 - 13762 mRNA_5394 0.21 +2.1
345 + 13762 mRNA_5394 0.23 -0.2
345 - 13762 mRNA_5394 0.23 -1.1
347 + 13762 mRNA_5394 0.24 +3.0
359 - 13762 mRNA_5394 0.25 -0.1
387 - 13762 mRNA_5394 0.28 -0.4
399 + 13762 mRNA_5394 0.29 +0.2
434 + 13762 mRNA_5394 0.33 +1.7
447 - 13762 mRNA_5394 0.34 +0.3
485 - 13762 mRNA_5394 0.38 +2.2
543 + 13762 mRNA_5394 0.44 -1.5
649 + 13762 mRNA_5394 0.55 +0.9
667 + 13762 mRNA_5394 0.57 +0.7
667 - 13762 mRNA_5394 0.57 -0.2
678 - 13762 mRNA_5394 0.58 +0.3
718 + 13762 mRNA_5394 0.63 +3.1
723 + 13762 mRNA_5394 0.63 +1.4
802 + 13762 mRNA_5394 0.71 +0.2
806 + 13762 mRNA_5394 0.72 +0.2
905 - 13762 mRNA_5394 0.82 +0.7
911 + 13762 mRNA_5394 0.83 +2.0
965 + 13762 mRNA_5394 0.88 +0.1
966 + 13762 mRNA_5394 0.89 +2.7
968 + 13762 mRNA_5394 0.89 +0.7
1,014 - -0.6
1,084 - -0.6
1,103 - +0.7
1,110 + -0.1
1,245 - 13763 mRNA_5395 0.11 -0.2
1,260 - 13763 mRNA_5395 0.13 +0.2
1,376 - 13763 mRNA_5395 0.27 +1.1
1,438 + 13763 mRNA_5395 0.34 +0.6
1,438 + 13763 mRNA_5395 0.34 -0.9
1,438 + 13763 mRNA_5395 0.34 +0.2
1,523 + 13763 mRNA_5395 0.44 +0.7
1,528 - 13763 mRNA_5395 0.45 +1.0
1,533 + 13763 mRNA_5395 0.45 +1.7
1,538 + 13763 mRNA_5395 0.46 +2.1
1,538 - 13763 mRNA_5395 0.46 -2.0
1,556 + 13763 mRNA_5395 0.48 +1.3
1,639 + 13763 mRNA_5395 0.58 +0.3
1,854 - 13763 mRNA_5395 0.83 -1.3
1,855 - 13763 mRNA_5395 0.83 -0.4
1,887 - 13763 mRNA_5395 0.87 -0.7
1,908 - 13763 mRNA_5395 0.89 +0.3
2,000 - +0.4
2,009 + -0.9

Or see this region's nucleotide sequence