Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5398

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13765 and 13766 are separated by 441 nucleotides13766 and 13767 are separated by 555 nucleotides mRNA_5397: 13765 - HMMPfam-Glycosyltransferase sugar-binding region containing DXD motif-PF04488,SUPERFAMILY--SSF53448, at 6,124 to 7,635 13765 mRNA_5398: 13766 - K17871 ndh1 NADH-ubiquinone reductase (non-electrogenic), at 8,077 to 11,128 13766 mRNA_5399: 13767 - K07078 K07078 uncharacterized protein, at 11,684 to 12,574 13767

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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7,150 + 13765 mRNA_5397 0.68 -0.2
7,159 - 13765 mRNA_5397 0.68 +0.3
7,227 - 13765 mRNA_5397 0.73 -0.4
7,269 - 13765 mRNA_5397 0.76 +0.1
7,573 + -0.2
7,590 - +3.6
7,604 + +1.6
7,715 - +0.6
7,742 - +1.0
7,748 + -0.0
7,873 + +1.8
7,877 + +0.2
7,959 + +0.2
7,964 - +1.1
7,976 + -0.6
7,978 + -0.9
7,981 - +0.0
7,993 + +3.1
7,998 + -0.3
8,003 - +1.2
8,159 + -0.3
8,169 + -1.1
8,283 + -1.0
8,392 - 13766 mRNA_5398 0.10 -0.7
8,423 - 13766 mRNA_5398 0.11 +1.9
8,426 + 13766 mRNA_5398 0.11 +0.1
8,429 - 13766 mRNA_5398 0.12 -0.2
8,439 + 13766 mRNA_5398 0.12 +3.9
8,712 + 13766 mRNA_5398 0.21 +0.2
8,719 + 13766 mRNA_5398 0.21 +0.3
8,861 - 13766 mRNA_5398 0.26 +1.6
8,867 + 13766 mRNA_5398 0.26 +1.6
9,115 - 13766 mRNA_5398 0.34 +0.2
9,191 + 13766 mRNA_5398 0.37 -0.5
9,291 + 13766 mRNA_5398 0.40 +1.7
9,319 - 13766 mRNA_5398 0.41 +0.4
9,431 + 13766 mRNA_5398 0.44 +0.6
9,481 + 13766 mRNA_5398 0.46 +1.3
9,575 + 13766 mRNA_5398 0.49 -0.1
9,590 - 13766 mRNA_5398 0.50 -0.3
9,591 + 13766 mRNA_5398 0.50 +0.1
9,597 + 13766 mRNA_5398 0.50 +1.9
9,624 + 13766 mRNA_5398 0.51 +0.2
9,689 - 13766 mRNA_5398 0.53 +2.4
9,886 - 13766 mRNA_5398 0.59 +0.7
10,141 - 13766 mRNA_5398 0.68 -0.0
10,144 + 13766 mRNA_5398 0.68 -1.1
10,274 + 13766 mRNA_5398 0.72 +1.7
10,274 + 13766 mRNA_5398 0.72 +1.7
10,295 + 13766 mRNA_5398 0.73 +0.3
10,322 - 13766 mRNA_5398 0.74 -2.0
10,345 - 13766 mRNA_5398 0.74 +0.2
10,713 - 13766 mRNA_5398 0.86 -0.9
10,749 + 13766 mRNA_5398 0.88 -0.4
10,821 + 13766 mRNA_5398 0.90 -1.7
10,853 + +2.9
10,874 + -0.7
10,879 + +0.1
10,972 - -0.8
10,973 + +1.0
11,196 + +0.3
11,200 - -0.0
11,291 - +1.0
11,429 + +1.4
11,435 - -0.5
11,447 + +1.3
11,451 + +0.4
11,466 - +2.1
11,467 + +0.8
11,467 + +3.1
11,472 + +0.3
11,488 + +1.3
11,496 + +2.9
11,641 + +0.7
11,663 + +1.6
11,679 + +0.1
11,681 - -2.5
11,681 + -0.9
11,793 - 13767 mRNA_5399 0.12 -2.4
11,863 - 13767 mRNA_5399 0.20 +1.1
11,937 - 13767 mRNA_5399 0.28 +0.1
11,938 - 13767 mRNA_5399 0.29 -0.9

Or see this region's nucleotide sequence