Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5423

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13790 and 13791 are separated by 183 nucleotides13791 and 13792 are separated by 481 nucleotides mRNA_5422: 13790 - HMMPfam-Domain of unknown function (DUF336)-PF03928,SUPERFAMILY--SSF143744, at 64,822 to 65,544 13790 mRNA_5423: 13791 - K01426 E3.5.1.4, amiE amidase, at 65,728 to 67,986 13791 mRNA_5424: 13792 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 68,468 to 70,424 13792

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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64,730 + +1.5
64,772 + +1.9
64,799 + +1.0
64,822 - +1.1
64,895 - 13790 mRNA_5422 0.10 +1.3
64,929 - 13790 mRNA_5422 0.15 +0.8
64,930 + 13790 mRNA_5422 0.15 -0.7
64,961 - 13790 mRNA_5422 0.19 +2.2
64,961 - 13790 mRNA_5422 0.19 -0.8
65,030 + 13790 mRNA_5422 0.29 +0.4
65,070 - 13790 mRNA_5422 0.34 +2.0
65,076 + 13790 mRNA_5422 0.35 -2.7
65,089 - 13790 mRNA_5422 0.37 -1.4
65,102 + 13790 mRNA_5422 0.39 +0.3
65,200 - 13790 mRNA_5422 0.52 -2.4
65,252 + 13790 mRNA_5422 0.59 +0.4
65,373 - 13790 mRNA_5422 0.76 -0.6
65,474 - +1.0
65,494 - +2.1
65,498 - -1.5
65,501 + +0.3
65,657 + +1.8
65,706 - +1.8
65,766 - +0.5
65,774 - -1.9
65,774 - +0.2
65,785 - -0.1
65,808 - -0.5
65,821 - -0.3
65,821 + -1.2
65,825 - +0.0
65,930 + -0.7
65,940 + -0.1
65,976 - 13791 mRNA_5423 0.11 -0.2
66,071 + 13791 mRNA_5423 0.15 -0.0
66,082 + 13791 mRNA_5423 0.16 -0.2
66,102 - 13791 mRNA_5423 0.17 +0.2
66,107 + 13791 mRNA_5423 0.17 +0.1
66,130 - 13791 mRNA_5423 0.18 -2.1
66,131 + 13791 mRNA_5423 0.18 +1.7
66,174 - 13791 mRNA_5423 0.20 +1.6
66,183 + 13791 mRNA_5423 0.20 +2.7
66,186 - 13791 mRNA_5423 0.20 -3.3
66,256 - 13791 mRNA_5423 0.23 +0.2
66,480 + 13791 mRNA_5423 0.33 -0.2
66,480 + 13791 mRNA_5423 0.33 +1.1
66,555 - 13791 mRNA_5423 0.37 +0.7
66,646 + 13791 mRNA_5423 0.41 +1.6
66,661 - 13791 mRNA_5423 0.41 +1.4
66,728 - 13791 mRNA_5423 0.44 +1.2
66,728 - 13791 mRNA_5423 0.44 -0.1
66,731 + 13791 mRNA_5423 0.44 -0.3
66,740 + 13791 mRNA_5423 0.45 +0.2
66,862 - 13791 mRNA_5423 0.50 -0.3
66,862 + 13791 mRNA_5423 0.50 +2.1
66,870 + 13791 mRNA_5423 0.51 +0.0
66,879 - 13791 mRNA_5423 0.51 +0.1
66,949 - 13791 mRNA_5423 0.54 +0.8
67,058 - 13791 mRNA_5423 0.59 +2.6
67,058 - 13791 mRNA_5423 0.59 -0.1
67,058 - 13791 mRNA_5423 0.59 +0.8
67,076 + 13791 mRNA_5423 0.60 -0.3
67,080 + 13791 mRNA_5423 0.60 +0.7
67,118 + 13791 mRNA_5423 0.62 +3.2
67,225 + 13791 mRNA_5423 0.66 -0.4
67,427 - 13791 mRNA_5423 0.75 +1.6
67,459 - 13791 mRNA_5423 0.77 +1.2
67,542 + 13791 mRNA_5423 0.80 +1.8
67,594 + 13791 mRNA_5423 0.83 +1.3
67,898 - -0.8
67,981 + +0.7
67,986 - +1.3
68,002 + +0.2
68,037 + +0.0
68,037 + +0.1
68,130 - +0.9
68,130 - +2.8
68,138 - -2.4
68,157 - +1.2
68,158 - +0.3
68,293 + -0.4
68,302 + -0.5
68,327 + -3.1
68,427 - +0.0
68,545 + -2.1
68,574 + -0.4
68,732 + 13792 mRNA_5424 0.13 +0.5
68,756 + 13792 mRNA_5424 0.15 +0.6
68,756 + 13792 mRNA_5424 0.15 -0.1
68,759 - 13792 mRNA_5424 0.15 -0.9
68,895 - 13792 mRNA_5424 0.22 -1.3
68,898 + 13792 mRNA_5424 0.22 -1.0
68,901 + 13792 mRNA_5424 0.22 -1.5
68,975 - 13792 mRNA_5424 0.26 -0.3

Or see this region's nucleotide sequence