Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5457

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13825 and 13826 are separated by 753 nucleotides mRNA_5457: 13825 - KOG2533 Permease of the major facilitator superfamily, at 132,935 to 135,021 13825 mRNA_5458: 13826 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 135,775 to 137,466 13826

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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132,179 + +1.5
132,570 + +1.0
132,681 + +0.9
132,729 + -1.4
132,731 - -0.6
132,974 + +1.2
133,257 + 13825 mRNA_5457 0.15 -0.6
133,276 + 13825 mRNA_5457 0.16 +2.0
133,406 - 13825 mRNA_5457 0.23 +2.5
133,629 - 13825 mRNA_5457 0.33 -1.0
133,862 - 13825 mRNA_5457 0.44 +0.4
134,425 + 13825 mRNA_5457 0.71 +1.8
134,559 + 13825 mRNA_5457 0.78 +1.8
134,692 - 13825 mRNA_5457 0.84 +0.7
134,700 + 13825 mRNA_5457 0.85 +1.3
134,846 + +1.3
134,958 - -1.6
134,994 - -0.5
134,994 + +0.5
135,005 - +0.0
135,112 - +1.9
135,133 - +2.0
135,133 - -0.8
135,142 + -0.2
135,152 - +1.0
135,155 + -0.0
135,160 + +1.9
135,165 + +1.1
135,192 - -1.2
135,210 + +0.5
135,228 - +0.3
135,238 - +0.8
135,271 - +1.7
135,284 + +1.0
135,285 - +1.6
135,287 + +1.4
135,290 - +0.6
135,299 - +0.4
135,310 - +0.7
135,319 + -0.3
135,319 + +0.2
135,327 - +2.3
135,354 - +0.7
135,446 - -1.1
135,446 - -0.9
135,464 + +1.2
135,464 + -0.2
135,485 - -0.2
135,486 - -0.3
135,486 - +0.3
135,489 + -1.0
135,493 + +2.2
135,506 + -0.1
135,510 + +1.0
135,511 + +0.9
135,560 - +1.3
135,560 - -1.6
135,570 + -0.0
135,571 - -0.8
135,577 - +1.8
135,580 + +1.0
135,581 + +2.5
135,586 + -0.6
135,586 - +2.4
135,607 - +2.4
135,616 + +0.8
135,627 + -0.1
135,632 - +1.9
135,647 - +3.3
135,654 + -0.2
135,656 + +1.9
135,682 - -2.7
135,688 + +1.1
135,724 + -1.2
135,728 + +0.2
135,818 - +0.2
135,825 - +0.7
135,864 - +1.4
135,929 - -0.9
135,944 - +0.4
135,985 + 13826 mRNA_5458 0.12 +0.8
135,990 - 13826 mRNA_5458 0.13 +1.0

Or see this region's nucleotide sequence