Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5466

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13833 and 13834 are separated by 203 nucleotides mRNA_5465: 13833 - Hypothetical Protein, at 156,189 to 157,604 13833 mRNA_5466: 13834 - K05841 E2.4.1.173 sterol 3beta-glucosyltransferase, at 157,808 to 163,476 13834

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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157,124 - 13833 mRNA_5465 0.66 +0.4
157,294 + 13833 mRNA_5465 0.78 -0.4
157,560 - -0.1
157,561 + +0.3
158,158 + +0.6
158,223 - -0.0
158,350 + +0.5
158,450 + 13834 mRNA_5466 0.11 -0.7
158,683 + 13834 mRNA_5466 0.15 -0.7
158,807 - 13834 mRNA_5466 0.18 +1.1
158,870 + 13834 mRNA_5466 0.19 +1.7
159,108 - 13834 mRNA_5466 0.23 +1.9
159,158 - 13834 mRNA_5466 0.24 +0.7
159,233 + 13834 mRNA_5466 0.25 +0.4
159,246 + 13834 mRNA_5466 0.25 +0.4
159,326 + 13834 mRNA_5466 0.27 +1.0
159,530 - 13834 mRNA_5466 0.30 +1.1
159,707 - 13834 mRNA_5466 0.33 +2.6
159,892 - 13834 mRNA_5466 0.37 -0.1
160,120 - 13834 mRNA_5466 0.41 +0.5
160,298 - 13834 mRNA_5466 0.44 -2.5
160,319 + 13834 mRNA_5466 0.44 -0.3
160,396 - 13834 mRNA_5466 0.46 -0.7
161,096 + 13834 mRNA_5466 0.58 +0.5
161,171 - 13834 mRNA_5466 0.59 +0.4
161,203 + 13834 mRNA_5466 0.60 +1.5
161,330 - 13834 mRNA_5466 0.62 -0.3
161,457 + 13834 mRNA_5466 0.64 +0.4
161,478 + 13834 mRNA_5466 0.65 +0.0
161,599 - 13834 mRNA_5466 0.67 +0.8
161,798 - 13834 mRNA_5466 0.70 -0.7
161,804 + 13834 mRNA_5466 0.70 -0.5
161,816 + 13834 mRNA_5466 0.71 +1.7
162,046 + 13834 mRNA_5466 0.75 -1.2
162,061 + 13834 mRNA_5466 0.75 -0.8
162,102 + 13834 mRNA_5466 0.76 -2.2
162,387 - 13834 mRNA_5466 0.81 +1.3
162,938 - -0.9
163,068 + -0.9
163,075 + -0.3
163,119 + -0.1
163,220 + -0.4
163,377 - +2.5
163,385 - +0.8
163,386 + +1.3
163,413 - +1.1
163,479 - +0.9
163,521 + +0.0
163,523 + -1.0
163,676 + +1.0
163,680 + +0.5
163,692 + -1.3
163,699 + +2.8
163,809 + -0.7
163,818 + +1.5
163,831 + -1.4
163,835 - +0.9
163,855 - +2.4
163,857 - +1.3
163,863 + -2.2
163,943 - +1.6
163,961 + +1.6
163,992 + +0.1
163,997 + -0.5
163,998 + +0.0
164,407 - +1.8

Or see this region's nucleotide sequence