Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5469

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13835 and 13836 are separated by 5 nucleotides13836 and 13837 are separated by 104 nucleotides13837 and 13838 are separated by 220 nucleotides mRNA_5467: 13835 - KOG4391 Predicted alpha/beta hydrolase BEM46, at 165,116 to 166,451 13835 mRNA_5468: 13836 - Hypothetical Protein, at 166,457 to 167,011 13836 mRNA_5469: 13837 - HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,ProSitePatterns-Bacterial rhodopsins retinal binding site.-PS00327,ProSitePatterns-Bacterial rhodopsins signature 1.-PS00950,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321, at 167,116 to 168,617 13837 mRNA_5470: 13838 - K00599 METTL6 methyltransferase-like protein 6, at 168,838 to 170,246 13838

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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166,171 + 13835 mRNA_5467 0.79 +1.0
166,381 + +2.5
166,642 - 13836 mRNA_5468 0.33 -0.5
166,650 + 13836 mRNA_5468 0.35 +0.7
166,749 + 13836 mRNA_5468 0.53 +0.3
166,754 + 13836 mRNA_5468 0.54 -0.2
166,772 - 13836 mRNA_5468 0.57 +0.2
166,783 - 13836 mRNA_5468 0.59 +0.4
166,939 + 13836 mRNA_5468 0.87 +0.6
167,478 + 13837 mRNA_5469 0.24 +0.2
167,978 + 13837 mRNA_5469 0.57 +1.2
168,119 - 13837 mRNA_5469 0.67 -0.3
168,167 + 13837 mRNA_5469 0.70 +2.3
168,235 - 13837 mRNA_5469 0.75 +1.5
168,362 - 13837 mRNA_5469 0.83 +1.7
168,376 - 13837 mRNA_5469 0.84 -0.6
168,382 + 13837 mRNA_5469 0.84 -0.3
168,382 + 13837 mRNA_5469 0.84 +1.2
168,394 + 13837 mRNA_5469 0.85 -0.6
168,502 + +1.0
168,637 - +1.0
168,850 + -0.0
169,306 + 13838 mRNA_5470 0.33 +1.3
169,423 + 13838 mRNA_5470 0.42 +0.4
169,423 + 13838 mRNA_5470 0.42 +0.7
169,423 - 13838 mRNA_5470 0.42 -0.2
169,450 - 13838 mRNA_5470 0.43 -2.3
169,571 - 13838 mRNA_5470 0.52 +0.4
169,587 + 13838 mRNA_5470 0.53 +0.5
169,591 + 13838 mRNA_5470 0.53 +0.4

Or see this region's nucleotide sequence