Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5496

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13863 and 13864 are separated by 455 nucleotides mRNA_5495: 13863 - K10733 GINS2, PSF2 GINS complex subunit 2, at 229,312 to 230,460 13863 mRNA_5496: 13864 - HMMPfam-HSF-type DNA-binding-PF00447,SUPERFAMILY--SSF46785, at 230,916 to 233,624 13864

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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230,540 - -0.9
230,559 - +0.8
230,707 + +0.5
230,712 - +0.5
230,986 - +1.4
231,139 + -0.1
231,150 - -0.7
231,159 - +0.6
231,283 - 13864 mRNA_5496 0.14 -0.5

Or see this region's nucleotide sequence