Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5506

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13874 and 13875 are separated by 98 nucleotides mRNA_5506: 13874 - KOG2504 Monocarboxylate transporter, at 257,318 to 259,586 13874 mRNA_5507: 13875 - KOG0134 NADH-flavin oxidoreductase/12-oxophytodienoate reductase, at 259,685 to 261,151 13875

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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256,360 + -0.3
256,530 + -1.0
256,793 + -2.1
256,951 - +2.6
257,091 + +0.2
257,384 - +0.9
257,404 + +0.4
257,486 - +0.5
257,539 - -0.3
257,558 - 13874 mRNA_5506 0.11 +3.0
257,656 + 13874 mRNA_5506 0.15 +1.4
257,700 - 13874 mRNA_5506 0.17 +0.3
258,139 - 13874 mRNA_5506 0.36 +2.2
258,280 + 13874 mRNA_5506 0.42 -2.9
258,553 - 13874 mRNA_5506 0.54 -1.6
258,821 + 13874 mRNA_5506 0.66 +0.1
259,182 - 13874 mRNA_5506 0.82 +1.6
259,451 + +1.8
259,895 - 13875 mRNA_5507 0.14 +2.0
260,510 + 13875 mRNA_5507 0.56 +2.4

Or see this region's nucleotide sequence