Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5526

Experiment: YPD

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13893 and 13894 are separated by 239 nucleotides13894 and 13895 are separated by 420 nucleotides mRNA_5525: 13893 - HMMPfam-Xyloglucan fucosyltransferase-PF03254, at 299,170 to 301,469 13893 mRNA_5526: 13894 - K00052 leuB 3-isopropylmalate dehydrogenase, at 301,709 to 303,276 13894 mRNA_5527: 13895 - K11883 NOB1 RNA-binding protein NOB1, at 303,697 to 305,493 13895

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YPD
remove
300,759 - 13893 mRNA_5525 0.69 +0.4
300,818 - 13893 mRNA_5525 0.72 +0.8
300,892 - 13893 mRNA_5525 0.75 -0.0
300,929 - 13893 mRNA_5525 0.76 +0.2
300,943 + 13893 mRNA_5525 0.77 +1.5
301,041 - 13893 mRNA_5525 0.81 -0.2
301,058 + 13893 mRNA_5525 0.82 -1.3
301,064 - 13893 mRNA_5525 0.82 +1.8
301,161 + 13893 mRNA_5525 0.87 -0.8
301,474 - -0.7
301,774 + +1.1
303,325 - +1.6
303,349 - +0.7
303,354 + -0.1
303,378 - +2.2
303,378 - -0.8
303,378 - +0.3
303,381 + +0.9
303,383 - +0.4
303,386 + +0.0
303,387 + +1.0
303,547 + +0.0

Or see this region's nucleotide sequence