Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5574

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13942 and 13943 are separated by 148 nucleotides mRNA_5574: 13942 - K02956 RP-S15, MRPS15, rpsO small subunit ribosomal protein S15, at 413,026 to 414,164 13942 mRNA_5575: 13943 - K12873 BUD31, G10 bud site selection protein 31, at 414,313 to 415,303 13943

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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412,064 + +0.5
412,097 + -0.5
412,097 - -1.1
412,117 + -1.0
412,126 + +0.3
412,134 - +1.0
412,148 - -0.4
412,149 + +0.1
412,170 + -0.3
412,253 + +0.2
412,290 - -0.9
412,292 + +0.5
412,424 + -0.5
412,554 + +0.1
412,556 - +1.3
412,563 + +0.0
412,692 + -0.7
412,704 - -0.1
412,709 + -0.2
412,845 - -0.6
412,846 + -0.3
412,980 - +0.7
413,002 - +0.1
413,003 + -0.1
413,009 - +1.5
414,161 + -0.4
414,313 + +1.0

Or see this region's nucleotide sequence