Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5583

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13950 and 13951 are separated by 448 nucleotides13951 and 13952 are separated by 117 nucleotides mRNA_5582: 13950 - KOG0254 Predicted transporter (major facilitator superfamily), at 431,120 to 432,974 13950 mRNA_5583: 13951 - BLAST putative ATP-dependent RNA helicase DHR1 [Wallemi..., at 433,423 to 434,660 13951 mRNA_5584: 13952 - K14780 DHX37, DHR1 ATP-dependent RNA helicase DHX37/DHR1, at 434,778 to 438,176 13952

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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432,651 + 13950 mRNA_5582 0.83 +0.9
433,052 - +0.1
433,061 - +1.1
433,190 + -0.4
433,204 - +0.8
433,216 + +2.4
433,217 + +0.7
433,219 + +0.5
433,225 + +0.3
433,226 - +0.3
433,349 - -0.2
433,362 + -1.4
433,367 + -2.3
433,369 - -0.1

Or see this region's nucleotide sequence