Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5595

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13962 and 13963 are separated by 273 nucleotides mRNA_5594: 13962 - K07943 ARL2 ADP-ribosylation factor-like protein 2, at 465,150 to 466,141 13962 mRNA_5595: 13963 - K11294 NCL, NSR1 nucleolin, at 466,415 to 467,468 13963

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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465,941 + 13962 mRNA_5594 0.80 +0.1
465,949 + 13962 mRNA_5594 0.81 -0.2
466,084 + +1.8
466,092 + +1.4
466,221 + -2.4
466,226 + +3.7
466,350 - +0.5
466,371 - +1.9
466,374 + +0.4
466,386 + -0.3
466,409 + -0.2
466,517 + +0.9

Or see this region's nucleotide sequence