Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5600

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13967 and 13968 are separated by 646 nucleotides13968 and 13969 are separated by 267 nucleotides mRNA_5599: 13967 - HMMPfam-Arrestin (or S-antigen), N-terminal domain-PF00339,SUPERFAMILY--SSF81296, at 475,591 to 478,385 13967 mRNA_5600: 13968 - BLAST polysaccharide lyase family 14 protein [Sistotremastr..., at 479,032 to 480,783 13968 mRNA_5601: 13969 - K15014 SLC29A1_2_3, ENT1_2_3 solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3, at 481,051 to 483,053 13969

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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478,137 - +1.5
478,453 - -0.7
478,491 - +0.3
478,718 + -0.5
478,867 - -0.0
478,874 - +0.5
479,518 + 13968 mRNA_5600 0.28 -0.0
479,736 - 13968 mRNA_5600 0.40 +1.4
479,744 + 13968 mRNA_5600 0.41 +2.2
479,765 + 13968 mRNA_5600 0.42 -0.5
479,790 + 13968 mRNA_5600 0.43 -0.7
479,885 + 13968 mRNA_5600 0.49 +1.0
480,032 - 13968 mRNA_5600 0.57 -0.6
480,195 + 13968 mRNA_5600 0.66 -0.6
480,211 - 13968 mRNA_5600 0.67 +0.3
480,339 - 13968 mRNA_5600 0.75 -0.3
480,357 + 13968 mRNA_5600 0.76 -0.5
480,522 + 13968 mRNA_5600 0.85 -0.6
480,649 - +0.9
480,659 + +0.1
480,791 + +1.9

Or see this region's nucleotide sequence