Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5608

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13976 and 13977 are separated by 369 nucleotides mRNA_5608: 13976 - K03018 RPC1, POLR3A DNA-directed RNA polymerase III subunit RPC1, at 494,885 to 501,857 13976 mRNA_5609: 13977 - HMMPfam-Leucine Rich Repeat-PF00560,ProSiteProfiles-Leucine-rich repeat profile.-PS51450,SMART-Leucine-rich repeats, typical (most populated) subfamily-SM00369,SUPERFAMILY--SSF52058, at 502,227 to 504,581 13977

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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493,908 - +0.3
493,924 + +0.3
494,365 + -2.2
494,552 + +0.7
494,656 + +0.0
494,803 + -1.2
494,809 - -1.9
494,826 + +1.3
495,280 + +0.1
500,717 + 13976 mRNA_5608 0.84 -0.0
500,858 + 13976 mRNA_5608 0.86 +1.6
501,868 - +2.6
502,016 - +2.9
502,129 - +0.1
502,143 - -0.4
502,152 - +0.1
502,153 - -0.3
502,154 + +0.1
502,157 - -0.1
502,293 - -1.0
502,452 - -0.2
502,473 - 13977 mRNA_5609 0.10 +2.2
502,477 + 13977 mRNA_5609 0.11 +0.6
502,477 + 13977 mRNA_5609 0.11 +1.4
502,748 + 13977 mRNA_5609 0.22 +0.2

Or see this region's nucleotide sequence