Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5620

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13987 and 13988 are separated by 297 nucleotides13988 and 13989 are separated by 380 nucleotides mRNA_5619: 13987 - K09885 AQPF aquaporin rerated protein, other eukaryote, at 526,532 to 528,365 13987 mRNA_5620: 13988 - HMMPfam-GRF zinc finger-PF06839, at 528,663 to 529,956 13988 mRNA_5621: 13989 - Hypothetical Protein, at 530,337 to 531,503 13989

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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527,798 - 13987 mRNA_5619 0.69 +2.0
527,873 + 13987 mRNA_5619 0.73 +0.2
528,041 - 13987 mRNA_5619 0.82 +0.3
528,079 + 13987 mRNA_5619 0.84 +2.0
528,190 + -2.5
528,533 + +0.1
528,808 - 13988 mRNA_5620 0.11 -0.0
529,954 - +0.3
529,955 + +0.4
529,957 + -2.2
529,966 - -1.1
530,050 + -0.3
530,081 - +3.2
530,082 + +1.5
530,083 + -0.3
530,136 + +1.1

Or see this region's nucleotide sequence