Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5644

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14012 and 14013 are separated by 269 nucleotides mRNA_5644: 14012 - Hypothetical Protein, at 583,736 to 584,443 14012 mRNA_5645: 14013 - BLAST putative alkaline phosphatase [Phaeomoniella chlamydo..., at 584,713 to 586,254 14013

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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582,871 + +0.7
583,406 - +2.0
583,829 - 14012 mRNA_5644 0.13 +2.1
583,956 - 14012 mRNA_5644 0.31 +0.1
584,058 + 14012 mRNA_5644 0.45 -0.2
584,472 - -0.5
584,666 + -0.6
584,784 - -0.8
584,975 - 14013 mRNA_5645 0.17 +0.3
585,103 + 14013 mRNA_5645 0.25 -0.3
585,353 + 14013 mRNA_5645 0.42 +0.6

Or see this region's nucleotide sequence