Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5655

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14022 and 14023 are separated by 216 nucleotides14023 and 14024 are separated by 667 nucleotides mRNA_5654: 14022 - K01637 E4.1.3.1, aceA isocitrate lyase, at 605,186 to 607,588 14022 mRNA_5655: 14023 - K01115 PLD1_2 phospholipase D1/2, at 607,805 to 615,263 14023 mRNA_5656: 14024 - HMMPfam-Universal stress protein family-PF00582,PRINTS-Universal stress protein signature-PR01438,SUPERFAMILY--SSF52402, at 615,931 to 617,472 14024

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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606,899 - 14022 mRNA_5654 0.71 +0.9
607,001 - 14022 mRNA_5654 0.76 +0.9
607,063 + 14022 mRNA_5654 0.78 -0.3
607,108 - 14022 mRNA_5654 0.80 +0.4
607,157 + 14022 mRNA_5654 0.82 +0.9
607,184 - 14022 mRNA_5654 0.83 +0.6
607,186 + 14022 mRNA_5654 0.83 -2.0
607,205 + 14022 mRNA_5654 0.84 +1.4
607,206 + 14022 mRNA_5654 0.84 +1.4
607,207 - 14022 mRNA_5654 0.84 +3.7
607,208 - 14022 mRNA_5654 0.84 +2.5
607,209 + 14022 mRNA_5654 0.84 +0.5
607,352 + +0.3
607,518 - +1.9
607,643 - +1.2
607,646 + +0.6
607,648 - -0.1
607,653 + +0.4
607,656 + +0.6
607,659 + +1.1
607,659 + +0.4
607,661 - +0.6
607,668 - -1.9
607,668 - +2.5
607,669 - +0.5
607,671 + +0.8
607,673 - +0.9
607,680 + -0.0
607,681 + -0.4
607,684 - -0.9
607,690 + -0.6
607,709 + +0.4
607,760 + -1.2
607,763 + -0.9
607,769 + -1.2
607,770 - +0.0
607,786 + -0.2
607,818 - -0.1
607,821 + +0.2
607,827 - -1.3
607,853 - -0.1
608,735 + 14023 mRNA_5655 0.12 -0.2
608,798 - 14023 mRNA_5655 0.13 +2.2
609,616 - 14023 mRNA_5655 0.24 +1.0
609,788 - 14023 mRNA_5655 0.27 -2.5
609,901 + 14023 mRNA_5655 0.28 +1.8
610,009 + 14023 mRNA_5655 0.30 +0.7
610,221 + 14023 mRNA_5655 0.32 +0.4
610,322 + 14023 mRNA_5655 0.34 +4.4
610,874 + 14023 mRNA_5655 0.41 +3.7
610,946 - 14023 mRNA_5655 0.42 +0.6
611,927 + 14023 mRNA_5655 0.55 -0.3
612,091 - 14023 mRNA_5655 0.57 -0.9
612,674 + 14023 mRNA_5655 0.65 +0.1
612,851 + 14023 mRNA_5655 0.68 +1.1
613,163 - 14023 mRNA_5655 0.72 -2.0
613,979 - 14023 mRNA_5655 0.83 +1.0
613,985 - 14023 mRNA_5655 0.83 -1.2
614,151 - 14023 mRNA_5655 0.85 -2.0
614,446 - 14023 mRNA_5655 0.89 -0.1
614,556 - +3.2
614,585 - -0.7
614,758 - -0.8
615,316 + +3.3
615,343 + +0.5
615,347 + -0.6
615,464 - +1.8
615,511 - -1.1
615,514 + +1.3
615,516 + -0.5
615,529 - +1.2
615,653 - -0.4

Or see this region's nucleotide sequence