Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5683

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14051 and 14052 are separated by 74 nucleotides mRNA_5683: 14051 - K15505 RAD5 DNA repair protein RAD5, at 683,055 to 687,923 14051 mRNA_5684: 14052 - K07404 pgl 6-phosphogluconolactonase, at 687,998 to 689,292 14052

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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682,983 + +0.6
682,987 + -0.0
682,987 - +0.9
683,043 - +0.5
683,154 - -0.1
683,159 + +0.6
683,161 - +0.4
683,168 - -0.3
683,321 + +0.8
683,442 - -0.0
683,446 - +1.2
683,451 + -0.2
683,740 + 14051 mRNA_5683 0.14 -1.2
683,766 - 14051 mRNA_5683 0.15 +0.8
683,861 + 14051 mRNA_5683 0.17 +1.3
684,026 - 14051 mRNA_5683 0.20 +2.4
684,262 - 14051 mRNA_5683 0.25 +1.0
684,745 - 14051 mRNA_5683 0.35 +1.5
684,745 - 14051 mRNA_5683 0.35 +2.3
684,872 + 14051 mRNA_5683 0.37 +0.3
684,878 - 14051 mRNA_5683 0.37 +1.0
684,886 + 14051 mRNA_5683 0.38 +1.6
684,910 - 14051 mRNA_5683 0.38 +1.2
684,916 - 14051 mRNA_5683 0.38 +0.4
684,947 - 14051 mRNA_5683 0.39 +0.6
685,102 - 14051 mRNA_5683 0.42 +0.8
685,400 - 14051 mRNA_5683 0.48 -0.7
685,455 - 14051 mRNA_5683 0.49 +0.3
685,673 - 14051 mRNA_5683 0.54 -0.5
685,772 + 14051 mRNA_5683 0.56 +0.5
686,055 + 14051 mRNA_5683 0.62 -0.9
686,206 + 14051 mRNA_5683 0.65 +1.6
686,230 - 14051 mRNA_5683 0.65 -0.3
686,468 + 14051 mRNA_5683 0.70 +1.8
686,992 - 14051 mRNA_5683 0.81 +1.2
687,000 + 14051 mRNA_5683 0.81 +0.2
687,144 + 14051 mRNA_5683 0.84 +0.3
687,294 + 14051 mRNA_5683 0.87 -0.2
687,367 + 14051 mRNA_5683 0.89 +0.6
687,490 + +0.5
687,504 + +0.6
687,609 - +2.4
688,016 + -0.1
688,169 - 14052 mRNA_5684 0.13 -1.0
688,197 + 14052 mRNA_5684 0.15 +0.2
688,416 - 14052 mRNA_5684 0.32 -0.9
688,488 - 14052 mRNA_5684 0.38 +0.6
688,494 - 14052 mRNA_5684 0.38 -0.5
688,756 + 14052 mRNA_5684 0.59 +0.6
688,764 - 14052 mRNA_5684 0.59 -0.6
688,776 - 14052 mRNA_5684 0.60 -2.3
688,778 - 14052 mRNA_5684 0.60 +0.2
688,782 - 14052 mRNA_5684 0.61 +0.7
688,784 + 14052 mRNA_5684 0.61 -0.3
688,795 + 14052 mRNA_5684 0.62 +2.6

Or see this region's nucleotide sequence