Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5703

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14070 and 14071 are separated by 832 nucleotides mRNA_5702: 14070 - K09478 ACADSB short/branched chain acyl-CoA dehydrogenase, at 721,912 to 723,848 14070 mRNA_5703: 14071 - KOG1289 Amino acid transporters, at 724,681 to 726,988 14071

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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723,872 - +0.6
724,175 - +2.0
724,196 + -1.3
724,307 - +1.2
724,316 - -0.6
724,325 - -1.4
724,329 - -0.1
724,339 + -1.5
724,352 + +0.6
724,370 + +0.6
724,447 + +0.1
724,455 - -1.0
724,479 + +0.8
724,588 + +1.2
724,629 - +1.0
724,634 - -1.9
724,635 + -0.2
724,640 - +0.9
724,641 + +0.7
724,642 + +0.3
724,646 + +1.3
724,646 + +0.2
724,776 - +1.3
724,778 - +0.7
724,780 - +0.5
724,797 - -0.6
724,927 + 14071 mRNA_5703 0.11 +0.2
725,043 + 14071 mRNA_5703 0.16 -0.3
725,243 - 14071 mRNA_5703 0.24 -2.1
725,244 - 14071 mRNA_5703 0.24 +0.1
725,571 - 14071 mRNA_5703 0.39 +0.9
725,673 - 14071 mRNA_5703 0.43 +0.0
725,807 - 14071 mRNA_5703 0.49 +1.7
725,960 - 14071 mRNA_5703 0.55 +3.7
725,963 - 14071 mRNA_5703 0.56 +1.6
725,974 + 14071 mRNA_5703 0.56 +0.1
726,049 - 14071 mRNA_5703 0.59 -2.5
726,655 - 14071 mRNA_5703 0.86 +0.0
726,690 - 14071 mRNA_5703 0.87 +0.2
726,969 + +0.6
727,144 - +0.2
727,162 + +1.1
727,230 + +0.4
727,259 - +2.5
727,275 - -0.4
727,289 - -0.7
727,295 + -1.7
727,317 - +4.1
727,318 + -0.7
727,319 + +0.6
727,338 + -0.5
727,348 - +4.3
727,349 + -0.5
727,359 + +0.0
727,468 - +1.3
727,473 + -0.4
727,483 - -1.4
727,504 + -0.3
727,518 - +1.6
727,530 + +0.9
727,538 + -1.7
727,608 - +0.2
727,696 - +0.5
727,697 - -0.3
727,728 + +0.6
727,736 + +1.7
727,745 + +0.3
727,749 + +1.4
727,866 - -0.6
727,875 + +1.7
727,891 + +1.4
727,892 - -0.3
727,903 - +0.6

Or see this region's nucleotide sequence