Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5713

Experiment: YPD

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14080 and 14081 are separated by 207 nucleotides14081 and 14082 are separated by 76 nucleotides mRNA_5712: 14080 - K03253 EIF3B translation initiation factor 3 subunit B, at 751,962 to 754,544 14080 mRNA_5713: 14081 - K18819 GOLS inositol 3-alpha-galactosyltransferase, at 754,752 to 755,900 14081 mRNA_5714: 14082 - K01409 KAE1, tsaD, QRI7 N6-L-threonylcarbamoyladenine synthase, at 755,977 to 757,736 14082

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YPD
remove
754,642 + +1.7
754,643 - +0.4
754,652 + -0.0
754,667 - +0.2
754,670 - +1.0
754,682 - +0.6
754,684 - +0.6
754,830 - +1.9
754,853 + +0.2
755,299 - 14081 mRNA_5713 0.48 +0.6
755,704 + 14081 mRNA_5713 0.83 +2.2
755,739 + 14081 mRNA_5713 0.86 -0.2
755,741 - 14081 mRNA_5713 0.86 -1.5
755,829 - +2.6
755,860 - -0.3
755,865 + -0.1

Or see this region's nucleotide sequence