Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5729

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14096 and 14097 are separated by 234 nucleotides14097 and 14098 are separated by 218 nucleotides mRNA_5728: 14096 - K03644 lipA lipoyl synthase, at 787,341 to 788,900 14096 mRNA_5729: 14097 - HMMPfam-MT-A70-PF05063,ProSiteProfiles-MT-A70-like family profile.-PS51143, at 789,135 to 790,820 14097 mRNA_5730: 14098 - SUPERFAMILY--SSF47113, at 791,039 to 793,394 14098

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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788,908 - +0.0
788,928 - +0.9
788,979 - +0.6
788,980 + +0.3
789,842 - 14097 mRNA_5729 0.42 -0.3
790,585 - 14097 mRNA_5729 0.86 +1.2
790,862 + +1.0
790,873 + +2.4
791,032 + +3.0
791,037 - +0.9
791,040 + +1.5
791,469 + 14098 mRNA_5730 0.18 +0.6

Or see this region's nucleotide sequence