Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5756

Experiment: YPD

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14123 and 14124 are separated by 353 nucleotides14124 and 14125 are separated by 162 nucleotides mRNA_5755: 14123 - HMMPfam-PB1 domain-PF00564,SUPERFAMILY--SSF54277, at 868,685 to 870,428 14123 mRNA_5756: 14124 - HMMPfam-Myb-like DNA-binding domain-PF00249,ProSiteProfiles-Myb-like domain profile.-PS50090,ProSiteProfiles-Myb-type HTH DNA-binding domain profile.-PS51294,SMART-SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains-SM00717,SUPERFAMILY--SSF46689, at 870,782 to 872,057 14124 mRNA_5757: 14125 - HMMPfam-Glycosyl hydrolase catalytic core-PF11790,SUPERFAMILY--SSF51445, at 872,220 to 874,136 14125

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YPD
remove
869,816 - 14123 mRNA_5755 0.65 +0.2
869,818 - 14123 mRNA_5755 0.65 -0.9
869,848 + 14123 mRNA_5755 0.67 +3.5
869,983 - 14123 mRNA_5755 0.74 -1.0
870,019 - 14123 mRNA_5755 0.76 +1.4
870,246 - 14123 mRNA_5755 0.90 +1.0
870,268 + +1.6
870,308 - -0.7
870,414 - +1.6
870,535 - -2.0
870,682 - -1.8
870,722 + +0.6
870,724 + -0.2
870,726 + -0.7
870,751 + +0.4
870,787 + +1.2
870,876 + +0.1
870,881 - -0.1
871,154 - 14124 mRNA_5756 0.29 +0.1
871,486 - 14124 mRNA_5756 0.55 +0.6
871,612 + 14124 mRNA_5756 0.65 +3.6
871,774 - 14124 mRNA_5756 0.78 +1.2
871,908 - 14124 mRNA_5756 0.88 -0.4
872,034 - -0.9
872,074 + -0.2
872,718 - 14125 mRNA_5757 0.26 -1.5
872,720 - 14125 mRNA_5757 0.26 +0.3
872,778 - 14125 mRNA_5757 0.29 +0.1
872,789 + 14125 mRNA_5757 0.30 +1.1
872,905 + 14125 mRNA_5757 0.36 -0.4

Or see this region's nucleotide sequence