Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5832

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14199 and 14200 are separated by 272 nucleotides14200 and 14201 are separated by 101 nucleotides mRNA_5831: 14199 - KOG1198 Zinc-binding oxidoreductase, at 1,043,926 to 1,045,308 14199 mRNA_5832: 14200 - K02863 RP-L1, MRPL1, rplA large subunit ribosomal protein L1, at 1,045,581 to 1,047,659 14200 mRNA_5833: 14201 - K09705 K09705 uncharacterized protein, at 1,047,761 to 1,048,668 14201

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,044,597 - 14199 mRNA_5831 0.49 +0.9
1,044,969 - 14199 mRNA_5831 0.75 +1.6
1,045,059 - 14199 mRNA_5831 0.82 +0.4
1,045,060 + 14199 mRNA_5831 0.82 +0.6
1,045,070 + 14199 mRNA_5831 0.83 +1.6
1,045,241 + +2.5
1,045,360 - +0.6
1,045,376 + +0.1
1,045,388 + +1.4
1,045,396 - +0.1
1,046,243 + 14200 mRNA_5832 0.32 +0.6
1,046,537 + 14200 mRNA_5832 0.46 -0.3
1,046,538 - 14200 mRNA_5832 0.46 -0.1
1,046,547 + 14200 mRNA_5832 0.46 -1.3
1,046,553 + 14200 mRNA_5832 0.47 -1.6
1,047,878 - 14201 mRNA_5833 0.13 -0.6
1,048,201 - 14201 mRNA_5833 0.48 +3.9
1,048,396 + 14201 mRNA_5833 0.70 +0.4
1,048,429 - 14201 mRNA_5833 0.74 +1.2
1,048,431 + 14201 mRNA_5833 0.74 -0.2
1,048,442 + 14201 mRNA_5833 0.75 -0.5
1,048,512 + 14201 mRNA_5833 0.83 -0.7
1,048,537 - 14201 mRNA_5833 0.85 +2.8
1,048,539 + 14201 mRNA_5833 0.86 -0.1
1,048,554 - 14201 mRNA_5833 0.87 -0.5

Or see this region's nucleotide sequence