Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5845

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14213 and 14214 are separated by 109 nucleotides mRNA_5845: 14213 - KOG1577 Aldo/keto reductase family proteins, at 1,072,070 to 1,073,549 14213 mRNA_5846: 14214 - K04508 TBL1 transducin (beta)-like 1, at 1,073,659 to 1,076,277 14214

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,071,213 - -1.6
1,071,220 - +0.3
1,071,349 + +0.6
1,071,657 - +0.4
1,071,924 + +0.7
1,072,062 - +0.4
1,072,074 + +2.4
1,072,225 - 14213 mRNA_5845 0.10 +0.3
1,072,241 + 14213 mRNA_5845 0.12 +1.6
1,072,382 - 14213 mRNA_5845 0.21 +0.6
1,073,234 + 14213 mRNA_5845 0.79 +3.1
1,073,701 + +0.6
1,074,120 - 14214 mRNA_5846 0.18 +0.5
1,074,120 - 14214 mRNA_5846 0.18 -0.5
1,074,494 - 14214 mRNA_5846 0.32 -0.5

Or see this region's nucleotide sequence