Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5868

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14235 and 14236 are separated by 203 nucleotides14236 and 14237 are separated by 341 nucleotides mRNA_5867: 14235 - K02950 RP-S12, MRPS12, rpsL small subunit ribosomal protein S12, at 1,122,384 to 1,123,037 14235 mRNA_5868: 14236 - HMMPfam-2OG-Fe(II) oxygenase superfamily-PF03171,HMMPfam-non-haem dioxygenase in morphine synthesis N-terminal-PF14226,PRINTS-Isopenicillin N synthase signature-PR00682,ProSiteProfiles-Fe(2+) 2-oxoglutarate dioxygenase domain profile.-PS51471,SUPERFAMILY--SSF51197, at 1,123,241 to 1,124,381 14236 mRNA_5869: 14237 - K10808 RRM2 ribonucleoside-diphosphate reductase subunit M2, at 1,124,723 to 1,126,548 14237

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,122,330 + -1.2
1,122,342 - +2.1
1,122,351 + -0.3
1,123,071 - +0.1
1,123,079 - +0.8
1,123,088 - +1.3
1,123,202 - +0.5
1,123,516 - 14236 mRNA_5868 0.24 +0.2
1,123,541 + 14236 mRNA_5868 0.26 +1.7
1,123,944 - 14236 mRNA_5868 0.62 +3.3
1,123,955 - 14236 mRNA_5868 0.63 -1.4
1,124,221 + 14236 mRNA_5868 0.86 -1.4
1,124,274 - +2.6
1,124,301 + -0.6

Or see this region's nucleotide sequence