Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5877

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14244 and 14245 are separated by 345 nucleotides14245 and 14246 are separated by 182 nucleotides mRNA_5876: 14244 - K14537 NUG2, GNL2 nuclear GTP-binding protein, at 1,141,307 to 1,144,033 14244 mRNA_5877: 14245 - K00624 E2.3.1.7 carnitine O-acetyltransferase, at 1,144,379 to 1,146,733 14245 mRNA_5878: 14246 - KOG4210 Nuclear localization sequence binding protein, at 1,146,916 to 1,148,820 14246

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,144,043 - +1.0
1,144,067 - -0.1
1,144,107 - +0.5
1,144,171 - -1.2
1,144,202 - +1.3
1,144,207 + -0.1
1,144,216 - +0.3
1,144,217 + +0.3
1,144,217 + +2.7
1,144,223 + +0.1
1,144,231 - +0.9
1,144,333 + +0.9
1,144,352 - +0.2
1,144,361 - -1.4
1,144,362 - -0.2
1,144,371 - -0.2
1,144,378 + +1.3
1,144,405 + +1.1
1,144,500 - +1.9
1,144,513 + +0.6
1,144,518 + +1.1
1,144,536 - -0.1
1,144,543 - +0.2
1,144,560 - -1.7
1,144,661 + 14245 mRNA_5877 0.12 -1.0
1,144,696 + 14245 mRNA_5877 0.13 -2.0
1,144,699 - 14245 mRNA_5877 0.14 +0.8
1,144,703 + 14245 mRNA_5877 0.14 +0.2
1,144,839 - 14245 mRNA_5877 0.20 -1.4
1,144,841 + 14245 mRNA_5877 0.20 -1.3
1,145,004 + 14245 mRNA_5877 0.27 -1.0
1,145,117 + 14245 mRNA_5877 0.31 +3.4
1,145,155 + 14245 mRNA_5877 0.33 +0.2
1,145,237 - 14245 mRNA_5877 0.36 -1.1
1,145,284 + 14245 mRNA_5877 0.38 +0.1
1,145,326 - 14245 mRNA_5877 0.40 -0.3
1,145,466 - 14245 mRNA_5877 0.46 -1.4
1,145,472 + 14245 mRNA_5877 0.46 -0.6
1,145,531 + 14245 mRNA_5877 0.49 -0.9
1,145,597 - 14245 mRNA_5877 0.52 -1.0
1,145,690 - 14245 mRNA_5877 0.56 +1.0
1,145,969 - 14245 mRNA_5877 0.68 +2.4
1,146,096 + 14245 mRNA_5877 0.73 +0.0
1,146,142 + 14245 mRNA_5877 0.75 -2.6
1,146,313 - 14245 mRNA_5877 0.82 +1.3
1,146,388 + 14245 mRNA_5877 0.85 +0.0
1,146,448 + 14245 mRNA_5877 0.88 +2.6
1,146,523 - +2.0
1,146,654 + -0.9
1,146,668 - +0.2
1,146,703 + -1.0
1,146,722 - -0.8
1,146,847 + -1.0
1,147,262 - 14246 mRNA_5878 0.18 +2.1
1,147,574 - 14246 mRNA_5878 0.35 +1.3

Or see this region's nucleotide sequence