Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5890

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14257 and 14258 are separated by 344 nucleotides mRNA_5889: 14257 - K02977 RP-S27Ae, RPS27A small subunit ribosomal protein S27Ae, at 1,176,475 to 1,177,214 14257 mRNA_5890: 14258 - K01876 DARS, aspS aspartyl-tRNA synthetase, at 1,177,559 to 1,180,094 14258

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,176,974 + 14257 mRNA_5889 0.67 +1.2
1,177,250 - -0.4
1,177,256 + -0.2
1,177,315 - +1.3
1,177,404 - -0.0
1,180,138 + +1.4
1,180,167 + -1.0
1,180,173 + +1.4
1,180,273 - +0.2
1,180,326 - +0.6
1,180,461 - +1.4
1,180,492 - -0.0
1,180,621 + +1.7
1,180,760 - +0.0
1,180,771 - -0.9
1,180,772 + -1.4
1,180,775 + -0.0
1,180,912 + +0.4
1,181,040 - -0.8
1,181,047 - +0.1

Or see this region's nucleotide sequence