Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5918

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14286 and 14287 are separated by 585 nucleotides mRNA_5918: 14286 - K11498 CENPE centromeric protein E, at 1,241,220 to 1,242,760 14286 mRNA_5919: 14287 - KOG1836 Extracellular matrix glycoprotein Laminin subunits alpha and gamma, at 1,243,346 to 1,244,488 14287

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,240,356 + +0.8
1,240,582 - +0.3
1,240,785 + -0.2
1,240,790 + -0.5
1,240,952 - +0.9
1,241,031 + -1.2
1,241,050 - -0.4
1,241,430 + 14286 mRNA_5918 0.14 -1.2
1,241,934 + 14286 mRNA_5918 0.46 -0.3
1,241,968 + 14286 mRNA_5918 0.49 -1.3
1,242,047 + 14286 mRNA_5918 0.54 -1.3
1,242,969 - +2.0
1,243,026 + +1.3
1,243,258 + -1.7
1,243,326 + +1.6
1,243,356 - -0.8
1,243,582 - 14287 mRNA_5919 0.21 +0.6
1,243,609 + 14287 mRNA_5919 0.23 -1.8
1,243,670 + 14287 mRNA_5919 0.28 +1.1

Or see this region's nucleotide sequence