Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5966

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14333 and 14334 are separated by 432 nucleotides14334 and 14335 are separated by 92 nucleotides mRNA_5965: 14333 - Hypothetical Protein, at 1,344,159 to 1,346,250 14333 mRNA_5966: 14334 - KOG1950 Glycosyl transferase, family 8 - glycogenin, at 1,346,683 to 1,347,941 14334 mRNA_5967: 14335 - Hypothetical Protein, at 1,348,034 to 1,349,199 14335

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,345,713 - 14333 mRNA_5965 0.74 +0.0
1,345,718 + 14333 mRNA_5965 0.75 -0.3
1,345,831 - 14333 mRNA_5965 0.80 -0.3
1,345,999 - 14333 mRNA_5965 0.88 +0.9
1,346,002 + 14333 mRNA_5965 0.88 +1.7
1,346,005 + 14333 mRNA_5965 0.88 +1.1
1,346,007 + 14333 mRNA_5965 0.88 -0.4
1,346,008 - 14333 mRNA_5965 0.88 -3.1
1,346,029 + 14333 mRNA_5965 0.89 +0.8
1,346,038 + 14333 mRNA_5965 0.90 +0.2
1,346,160 - +0.1
1,346,169 - -0.9
1,346,179 + -1.8
1,346,194 + +1.6
1,346,309 + +0.7
1,346,321 - +0.6
1,346,322 + +1.4
1,346,330 - +1.2
1,346,357 - -0.1
1,346,455 - -1.4
1,346,488 - +0.5
1,346,490 + -0.9
1,346,492 + -0.8
1,346,495 + -0.3
1,346,501 - +0.4
1,346,503 + -0.5
1,346,510 + +0.6
1,346,510 - +0.1
1,346,511 + +2.5
1,346,516 + -0.6
1,346,551 - -0.5
1,346,552 - -1.4
1,346,557 - +1.4
1,346,558 + +0.7
1,346,560 + +1.3
1,346,581 + +0.8
1,346,582 - -0.0
1,346,583 - -0.6
1,346,589 - +0.9
1,346,590 + -0.1
1,346,590 + -0.4
1,346,592 + +3.0
1,346,595 - +0.5
1,346,596 - +0.7
1,346,598 - -0.5
1,346,600 - -1.1
1,346,609 - +0.5
1,346,610 - -1.7
1,346,612 + +0.8
1,346,617 - +0.5
1,346,623 + +0.1
1,346,624 + +0.8
1,346,626 + +0.4
1,346,628 + -0.8
1,346,628 - +2.1
1,346,646 - +0.5
1,346,750 - -0.1
1,346,774 + +1.6
1,346,786 + +0.6
1,346,801 - +0.6
1,346,951 + 14334 mRNA_5966 0.21 +0.1
1,347,187 - 14334 mRNA_5966 0.40 +1.7
1,347,380 + 14334 mRNA_5966 0.55 +0.7
1,347,520 - 14334 mRNA_5966 0.66 +0.8
1,348,047 + -1.1
1,348,095 - +0.2
1,348,240 - 14335 mRNA_5967 0.18 +0.2
1,348,262 - 14335 mRNA_5967 0.20 +0.3
1,348,278 + 14335 mRNA_5967 0.21 -0.8
1,348,422 + 14335 mRNA_5967 0.33 +0.6
1,348,524 + 14335 mRNA_5967 0.42 -0.4
1,348,691 + 14335 mRNA_5967 0.56 +0.2
1,348,706 + 14335 mRNA_5967 0.58 -0.8
1,348,737 - 14335 mRNA_5967 0.60 -0.8

Or see this region's nucleotide sequence