Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5977

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14344 and 14345 are separated by 392 nucleotides14345 and 14346 are separated by 724 nucleotides mRNA_5976: 14344 - SUPERFAMILY--SSF52047, at 1,363,510 to 1,364,859 14344 mRNA_5977: 14345 - HMMPfam-F-box-like-PF12937, at 1,365,252 to 1,367,121 14345 mRNA_5978: 14346 - Hypothetical Protein, at 1,367,846 to 1,369,331 14346

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,364,579 + 14344 mRNA_5976 0.79 -1.1
1,364,697 - 14344 mRNA_5976 0.88 +2.9
1,364,897 - -0.3
1,365,020 + -1.3
1,365,700 + 14345 mRNA_5977 0.24 +0.7
1,365,893 - 14345 mRNA_5977 0.34 +0.2
1,366,354 - 14345 mRNA_5977 0.59 +0.5
1,366,377 - 14345 mRNA_5977 0.60 +1.8
1,366,490 - 14345 mRNA_5977 0.66 -0.3
1,366,684 + 14345 mRNA_5977 0.77 -0.7
1,366,735 - 14345 mRNA_5977 0.79 -1.8
1,366,892 - 14345 mRNA_5977 0.88 +1.1
1,366,896 - 14345 mRNA_5977 0.88 +0.4
1,367,055 - +0.6
1,367,262 + +2.8
1,367,345 - +1.1
1,367,347 - +1.4
1,367,348 - +0.0
1,367,356 + -1.2
1,367,358 - +1.1
1,367,374 + +1.9
1,367,374 + +1.8
1,367,374 + -0.6
1,367,374 - -0.7
1,367,448 + +1.8
1,368,093 + 14346 mRNA_5978 0.17 +1.5

Or see this region's nucleotide sequence