Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5993

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14360 and 14361 are separated by 172 nucleotides14361 and 14362 are separated by 206 nucleotides mRNA_5992: 14360 - Hypothetical Protein, at 1,400,743 to 1,402,011 14360 mRNA_5993: 14361 - K12847 USP39, SAD1 U4/U6.U5 tri-snRNP-associated protein 2, at 1,402,184 to 1,404,821 14361 mRNA_5994: 14362 - K14774 UTP25, DEF U3 small nucleolar RNA-associated protein 25, at 1,405,028 to 1,407,712 14362

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,401,371 - 14360 mRNA_5992 0.49 -1.0
1,401,386 + 14360 mRNA_5992 0.51 -0.1
1,401,389 - 14360 mRNA_5992 0.51 +0.1
1,401,513 - 14360 mRNA_5992 0.61 -1.0
1,401,821 - 14360 mRNA_5992 0.85 -1.1
1,401,910 + -0.3
1,402,306 + -1.8
1,404,179 + 14361 mRNA_5993 0.76 +1.2
1,404,857 - -0.4
1,404,880 - -3.4
1,404,911 - +0.8

Or see this region's nucleotide sequence