Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6020

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14387 and 14388 are separated by 307 nucleotides14388 and 14389 are separated by 325 nucleotides mRNA_6019: 14387 - Hypothetical Protein, at 1,463,664 to 1,464,236 14387 mRNA_6020: 14388 - SUPERFAMILY--SSF52047, at 1,464,544 to 1,465,976 14388 mRNA_6021: 14389 - Hypothetical Protein, at 1,466,302 to 1,468,008 14389

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,463,691 - +0.8
1,463,692 + -1.9
1,463,908 + 14387 mRNA_6019 0.43 -0.6
1,463,941 - 14387 mRNA_6019 0.48 +0.3
1,463,946 - 14387 mRNA_6019 0.49 +1.7
1,463,947 - 14387 mRNA_6019 0.49 -2.2
1,463,956 + 14387 mRNA_6019 0.51 -0.1
1,464,009 + 14387 mRNA_6019 0.60 +1.7
1,464,269 + +0.4
1,464,477 - -0.2
1,464,641 - -0.1
1,464,995 - 14388 mRNA_6020 0.31 +1.9
1,466,149 - +1.3
1,466,292 - +1.2
1,466,336 + +2.9
1,466,475 + 14389 mRNA_6021 0.10 +0.4
1,466,497 + 14389 mRNA_6021 0.11 +0.3
1,466,628 + 14389 mRNA_6021 0.19 -1.8
1,466,762 - 14389 mRNA_6021 0.27 +0.4
1,466,790 + 14389 mRNA_6021 0.29 +0.5
1,466,932 + 14389 mRNA_6021 0.37 +0.2

Or see this region's nucleotide sequence