Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6029

Experiment: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14396 and 14397 are separated by 203 nucleotides14397 and 14398 are separated by 252 nucleotides mRNA_6028: 14396 - KOG2521 Uncharacterized conserved protein, at 1,480,225 to 1,481,311 14396 mRNA_6029: 14397 - K01056 PTH1, pth, spoVC peptidyl-tRNA hydrolase, PTH1 family, at 1,481,515 to 1,482,449 14397 mRNA_6030: 14398 - KOG4036 Uncharacterized conserved protein, at 1,482,702 to 1,483,838 14398

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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1,480,520 + 14396 mRNA_6028 0.27 -0.2
1,480,547 + 14396 mRNA_6028 0.30 +0.5
1,480,637 - 14396 mRNA_6028 0.38 -0.3
1,480,683 + 14396 mRNA_6028 0.42 -0.3
1,480,686 - 14396 mRNA_6028 0.42 -0.8
1,480,692 + 14396 mRNA_6028 0.43 +0.8
1,480,701 + 14396 mRNA_6028 0.44 +1.8
1,480,811 - 14396 mRNA_6028 0.54 +3.1
1,480,813 - 14396 mRNA_6028 0.54 +2.7
1,480,859 - 14396 mRNA_6028 0.58 -0.7
1,480,863 + 14396 mRNA_6028 0.59 +1.3
1,480,866 - 14396 mRNA_6028 0.59 -0.9
1,480,887 + 14396 mRNA_6028 0.61 -1.2
1,480,931 - 14396 mRNA_6028 0.65 +0.8
1,480,971 - 14396 mRNA_6028 0.69 -0.6
1,480,972 - 14396 mRNA_6028 0.69 +1.0
1,480,979 + 14396 mRNA_6028 0.69 +1.7
1,480,979 + 14396 mRNA_6028 0.69 +1.0
1,480,979 + 14396 mRNA_6028 0.69 -2.0
1,480,982 - 14396 mRNA_6028 0.70 +0.2
1,480,982 - 14396 mRNA_6028 0.70 -0.6
1,480,982 - 14396 mRNA_6028 0.70 +0.9
1,480,982 - 14396 mRNA_6028 0.70 -0.2
1,481,012 - 14396 mRNA_6028 0.72 +1.2
1,481,020 + 14396 mRNA_6028 0.73 +0.0
1,481,020 + 14396 mRNA_6028 0.73 +1.9
1,481,076 - 14396 mRNA_6028 0.78 +0.6
1,481,120 - 14396 mRNA_6028 0.82 +0.2
1,481,247 - +2.9
1,481,274 + -0.4
1,481,284 + +0.0
1,481,318 + +0.4
1,481,372 - -0.3
1,481,381 + +0.9
1,481,394 - -0.0
1,481,399 - +0.4
1,481,404 - +0.8
1,482,482 - +0.7
1,482,569 - +1.0
1,482,608 - +0.4
1,482,612 - +0.8
1,482,622 - -0.0
1,482,878 - 14398 mRNA_6030 0.15 -0.5
1,482,946 + 14398 mRNA_6030 0.21 +1.3
1,483,016 - 14398 mRNA_6030 0.28 +0.4
1,483,082 - 14398 mRNA_6030 0.33 +1.2
1,483,212 - 14398 mRNA_6030 0.45 +0.6
1,483,340 + 14398 mRNA_6030 0.56 +0.3

Or see this region's nucleotide sequence